Raven -
I'm going to guess that you have a ground fault somewhere. The CDI and coil should not be intermittent - they should just fail.
If you can, reverse the clutch and side stand bypasses to see if they are the culprit. If you didn't do them then they may not have been done well and reliably.
Check all of your ground connections to make sure that they are clean and tight. Your neutral light problem seems like a grounding problem.
Inspect the main harness from the front of the bike back to the seat, looking for chafed areas where the wires may be shorting against something.
Does the bike ever stop running after you've started it?
Tom
I'm going to guess that you have a ground fault somewhere. The CDI and coil should not be intermittent - they should just fail.
If you can, reverse the clutch and side stand bypasses to see if they are the culprit. If you didn't do them then they may not have been done well and reliably.
Check all of your ground connections to make sure that they are clean and tight. Your neutral light problem seems like a grounding problem.
Inspect the main harness from the front of the bike back to the seat, looking for chafed areas where the wires may be shorting against something.
Does the bike ever stop running after you've started it?
Tom